In case anyone finds this later I will keep updating my progress
After flushing and reducing the nutrient solution strength the pods are looking better, but the plant in general have been suffering a lot.
It got some damage after I forgot to turn the light timer back on for an entire weekend, so they were in constant full light for a couple of days and got a bit burnt. Not sure if it was actually related to what came after or not.
Since then the leaves have just gotten worse and worse - older leaves have been getting yellow areas with brown/black spots within them, new leaves are curling upwards like crazy, and some leaves are just kind of wilting/dying from the outside and inwards. Until yesterday I chalked a lot of it up to very humid basement it has been growing in because of the warm weather outside (been at about 22 degrees C and 75% RH in the "grow room"), and therefore the plant hasn't been transpiring enough.
Then I decided to take a look in a 45x magnifying glass yesterday and I saw this little translucent f*** running happily along on the underside of a yellowing leaf. Took it to work today and checked in the microscope and I am pretty confident that it is a western flower thrip.
Maybe it has transmitted a virus, maybe they are just having a feast, maybe the humidity is the main issue, but I guess they are making a right mess of it all combined.
I took the plant outside today, far from my other outside plants, and we will see what happens I guess. I will update again.
I just hope it wasn't too late and they have already infected two other plants growing in the same room - they are in a hydroton bed ebb and flow system which is new to me. (Also included some pictures of this, because I think it will be pretty awesome - I covered the hydroton with some rip-stop nylon because it seemed like some algae were really loving the moist and "sunny" conditions) I guess it won't be the biggest problem in the world if they are infected as well, since it has just been 2 months since they germinated and the season can be whenever I want it to be.
Also I wanted to create a bonsai/bonchi from it, but if it's infected I guess that's out of the question as well.
On the bright side the pods are delicious for snacking, and it is still producing well enough