agree...
stem browing in a young plant is not normal and a tale tale sign of root rot (fungal rot)...
IMO what you are seeing is only part of the stem is dead/dying...the attacking mechanism of fungal rot is bacteria growing in the "circulatory system" of the plants...in the first stages of root rot, the fungus multiplies and stops up the "artery" leading to some part of the plant...that part of the plant serviced by the stopped up artery dies because no water/nutrition gets to it...if fungal rot is not stopped at these early stages, the bacteria will continue to multiply and eventually stop up the entire plants root system...healthy roots will be white...fungal rot roots will be brown, darkening as the affliction worsens...
one of the ways to check for root rot is to take the roots and gently pull down on the "sheath" covering the root...if this sheath slips, root rot is an issue...if it does not slip down, the root is still fairly healthy but probably needs attention right quick...
treating for root rot is a double edged sword for soil growers...peroxide laden water will kill the bacteria causing the root rot (but may not save the part of the plant that is dying) but it will also kill
all bacteria in the soil, good and bad (you growing aeroponically don't have the soil issue)...you can try 1 Tbsp H[sub]2[/sub]O[sub]2[/sub] per gallon of water and see if that helps...
again, this is my opinion...others may differ...
sorry to ramble...got carried away....