So the dry leaves that have fallen will be replaced with new leaves?
Any chance this will make for a stronger or better plant?
You might even get some branches there. I've chopped up tons of leaves on some of my plants that got mold to promote growth of the healthy leaves underneath (they are no longer shaded and grow faster). They are growing branches there now. I wouldn't worry about it. I'd actually advise to remove the dried leaves so that the plant doesn't waste its energy on them. They won't be replaced (the growth pattern is different) but you could get more branching lower on the plant. You will at the very least get a bunch of leaves growing there . I wouldn't bury the plant above where the cotyledons were.